Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKNKTFLAAALVALAASFPVHAATDYTRTRYPIVLSHGLFGF-KSVGPVDYWHAIVPALEKDGAKVFATSQSPVNSNEV---RGEQLLAQVEEVLALTGAEKVNLIGHSQGGMTVRYVAGVAPQLVASVTTMGTPHKGTPVADAVTGFSEFLGPIG--TEVIASAVEALFSVVDIVDGGEWVKGDALAALNSLNTPGTARFNQRFPQA---IPASACGQGA--ETVAGVRY--YSMSGT--------GSLT--------------NALDPSSAGLAVTGLLF----GEANDGLVGQCSSHLGSVVKDNYRMDHLDEVNQLLGLVSLFESDPTQVYRQHANRLRNVGL |
1YS1 Chain:X ((1-320)) | -----------------------ADNYAATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPHRGSEFADFVQGVLAY-DPTGLSSTVIAAFVN-VFGI--LTSSSNNTNQDALAALKTLTTAQAATYNQNYPSAGLGAPGS-CQTGAPTETVGGNTHLLYSWAGTAIQPTISVGGVTGATDTSTIPLVDPANALDPSTLALFGTGTVMVNRGSGQNDGVVSKCSALYGQVLSTSYKWNHLDEINQLLGVRGANAEDPVAVIRTHANRLKLAGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YS1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -53620 for 2426 contacts (-22.1/contact) +
2D Compatibility (PS) -30200 + (NN) -11292 + (LL) 2868
1D Compatibility (HY) -20800 + (ID) 7150
Total energy: -120194.0 ( -49.54 by residue)
QMean score : 0.367
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