Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATAPRPLREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQGGEVIGLVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALF-LEGQREACAAGRFVHVFVERRSSRPVAIPQELRDALAALQSSAQ
3QY3 Chain:A ((27-156))
----------QLLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWF-ETLGIDLEGAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHTLEDPQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAIA-------
General information:
TITO was launched using:
RESULT:
Template:
3QY3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89403 for 924 contacts (-96.8/contact) +
2D Compatibility (PS) -13776 + (NN) -1497 + (LL) 1600
1D Compatibility (HY) -9200 + (ID) 2200
Total energy: -114476.0 ( -123.89 by residue)
QMean score : 0.318
(partial model without unconserved sides chains):
PDB file :
Tito_3QY3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QY3-query.scw
PDB file :
Tito_Scwrl_3QY3.pdb
: