Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLIVDDEPLARERLARLVGQLDGYRVLEPSASNGEEALTLIDSLKPDIVLLDIRMPGLDGLQVAARLCEREAPPAVIFCTAHDEFAL--EAFQVSAVGYLVKPVRSEDLAEALKKASRPNRVQLAALTKPPASGGSGPRSHISARTRKGIELIPLEEVIFFIADHKYVTLRHAQGEVLLDEPLKALEDEFGERFVRIHRNALVARERIERLQRTPLGHFQLYLKGLDGDALTVSRRHVAGVRRLMHQL
1TMY Chain:A ((5-119))
--VLIVDDAAFMRMMLKDIITKA-GYEV-AGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS-----------------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1TMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95068 for 899 contacts (-105.7/contact) +
2D Compatibility (PS) -12724 + (NN) -13516 + (LL) 10036
1D Compatibility (HY) -10800 + (ID) 2100
Total energy: -124172.0 ( -138.12 by residue)
QMean score : 0.654
(partial model without unconserved sides chains):
PDB file :
Tito_1TMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TMY-query.scw
PDB file :
Tito_Scwrl_1TMY.pdb
: