Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDNERTIVVRVLKFDPQSAVNKPHFKEYQLKETPSMTLFIALNLIREHQDPDLSFDFVCRAGICGSCAMMVNGRPRLACKTLTSSFENGVITLMPMPSFTLIKDLSVNTGDWFSDMTKRVESWAHSKEEVDITKPEKRVEPDEAQEVFELDRCIECGCCIASCGTKLMRPNFIGAAGMNRAMRFMIDSHDERSDDDFYELVGDDDGVFGCMSLIACHDTCPKELPLQSSIATLRNRMLKVGKSR-----
1L0V Chain:B ((1-243))
--AEMKNLKIEVVRYNPEVD-TAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDG-MKVEALANFPIERDLVVDM-THFIESLEAIKPYIIGNSR-TADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLN-SQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIATLKPR
General information:
TITO was launched using:
RESULT:
Template:
1L0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125986 for 1903 contacts (-66.2/contact) +
2D Compatibility (PS) -25067 + (NN) -7545 + (LL) 412
1D Compatibility (HY) -14000 + (ID) 3200
Total energy: -175386.0 ( -92.16 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_1L0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L0V-query.scw
PDB file :
Tito_Scwrl_1L0V.pdb
: