Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNLDILYCKLAMCTTLLTERLRLQPVDL-SNINDFLEFSSDSETVFYMQRY---KA-NTTEEAQMVLANVCMKSPLGIYAMIETESNKMIGIIELEIRD--EFSAEFGYI-LNKNYSGKGYMTEACSKLMSVGFEYLDLERIYARFDINNKKSGNVMERLGMKKEGELRHLAKNPKGEWKTRAYYSILKEEYFNKVNTK
3TCV Chain:A ((16-197))
--------------KIFEGRYVRLEPLNAQKHGDELFAASSVEDAEQR-FTWLFETPPATRAEFEPWLDKASKSDDPLFFAVIDKASGKVAGRQALMRIDPANGVIEIGSIYWGPLISRRPAATEAQFLFMQYVFDVLGYRRYEWECHNENGPSRRAAERFGFRFEGIFRQH-MVVKGRNRDTAWFSVLDSEWPALKQAY
General information:
TITO was launched using:
RESULT:
Template:
3TCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67013 for 1311 contacts (-51.1/contact) +
2D Compatibility (PS) -18124 + (NN) -3046 + (LL) 1728
1D Compatibility (HY) -2800 + (ID) 2000
Total energy: -91255.0 ( -69.61 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_3TCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TCV-query.scw
PDB file :
Tito_Scwrl_3TCV.pdb
: