Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFNIILAMVCALIGLIIGYVAISMKMKSSKEAAELTLLNAEQDAVDLRGKAEIEAEHIRKAAERESKAHQKELLLEAKEEARKYREEIEKEFKSDRQELKQMEARLTDRASSLDRKDENLSNKEKMLDSKEQSLTDKSRHINEREQEIATLETKKVEELSRIAELSQEEAKDIILADTEKDLAHDIATRIKEAEREVKDRSNKIAKDLLAQAMQRLAGEYVTEQTITTVHLPDDNMKGRIIGREGRNIRTLESLTGIDVIIDDTPEVVVLSGFDPIRREIARMTLESLIQDGRIHPARIEELVEKNRLEMDQRIREYGEAAAYEIGAPNLHPDLIKIMGRLQFRTSYGQNVLRHSVEVGKLAGILAGELGE----NVDLARRAGFLHDMGKAIDRE----------------------------VEGSHVEIGMEFARKYKEHPIVVNTIASHHGDVE--PDSVIAVIVAAADALSSARPGARNESMENYIKRLRDLEEIANGFEGVQNAFALQAGREIRIMVQPGKVSDDQVVIMSHKVREKIEQNLDYPGNIKVTVIREMRAVDFAK |
3MEM Chain:A ((276-407)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAYLAGLLHNFGHLVLAQVFPPHFKLVCRSLEVSPHIDSSVIEHYLLGITREQIAAQLMENWGMPDEVTLAIRYQKNPAYDGPHNVYARLLWLGRQLLTERGVALGAGESATQAVYDELGLDRELVQEQFDELVRRKDSIMAMAGMMSQ------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MEM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -34034 for 747 contacts (-45.6/contact) +
2D Compatibility (PS) -10608 + (NN) -5696 + (LL) 32724
1D Compatibility (HY) -6000 + (ID) 1000
Total energy: -24614.0 ( -32.95 by residue)
QMean score : 0.494
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