Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQETTKSIFPKGEKNPYGEFFIGQSYLAALAKSP--DGNVSVGNVTFEAGCRNNWHVHLDGYQILLVTEGSGWYQEEGK-EAVSLKPGDVIVTDKGVRHWHGAKKDSEFAHIAITAG----KSEFYEAVSDEKYSKLG
2F4P Chain:A ((18-142))
--------FERGSK-GSSDFFTGNVWVKMLVTDENGVFNTQVYDVVFEPGARTHWHS-HPGGQILIVTRGKGFYQERGKPA-RILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQVHLGPAEWLGSVTEEEYRKAT
General information:
TITO was launched using:
RESULT:
Template:
2F4P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23451 for 843 contacts (-27.8/contact) +
2D Compatibility (PS) -13017 + (NN) -5032 + (LL) 884
1D Compatibility (HY) -7600 + (ID) 2500
Total energy: -50716.0 ( -60.16 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_2F4P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F4P-query.scw
PDB file :
Tito_Scwrl_2F4P.pdb
: