Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MNIIIIGAQASGKMTIGQEIAKQTGMTLFHNHDSIDFVLRFMPWSPDSIALTESIRFKFFETFAKTGQKMIF---TIVIDFNDSRDVVFLEKIQTVFQSHNQEVLFVELETELSERLKRNRTENRLKHKPSKRDIKWSENDICLTMDYAIFNPEVAPEALTYYHKINNTCLTATETAYLIIQKINQIKEKN
1KNQ Chain:A ((3-173))
TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP--RRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSA-----LKKHYRDLLREGNPNLSFIYLKG----------DFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVD--------IDQPLEGVVASTIEVIKK-
General information:
TITO was launched using:
RESULT:
Template:
1KNQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58690 for 1244 contacts (-47.2/contact) +
2D Compatibility (PS) -17459 + (NN) -6227 + (LL) 1884
1D Compatibility (HY) -5600 + (ID) 950
Total energy: -87042.0 ( -69.97 by residue)
QMean score : 0.265
(partial model without unconserved sides chains):
PDB file :
Tito_1KNQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KNQ-query.scw
PDB file :
Tito_Scwrl_1KNQ.pdb
: