Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDIKILALDLDGTLFTTDKKVSEENKVALKAAREKGIKVVITTGRPLKAIGNLLEDLELVSDEDYSITFNGGLVQQN-TGKILAKTAMTRQEVEDIHEELYQVGLPTDILSEGTVYSIANKGHHS---QYHLA-NPL--LEFIEVDDLEQVPKDVVYNKIVSVIDATYLDQQIAKLPDRLKVDYEMFKSRDIILELMPKGVHKAVGLELLTKHLGLDSSQVMAMGDEANDLSMLEWAGLGVAMANGIPEAKAIAKATTICNNDESGVAEAIGKYILSEEN |
| 1RKQ Chain:A ((3-272)) | -LAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHALDRTTLYTANRDISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDE-PAIL-----DQAIARIPQEVKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPSVKEVANFVTK-SNLEDGVAFAIEKYVLN--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -104526 for 2308 contacts (-45.3/contact) +
2D Compatibility (PS) -28104 + (NN) -10067 + (LL) 984
1D Compatibility (HY) -23200 + (ID) 4900
Total energy: -169813.0 ( -73.58 by residue)
QMean score : 0.568
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