Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
2ZP4 Chain:A ((1-121))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTNDNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDKK-----
General information:
TITO was launched using:
RESULT:
Template:
2ZP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67799 for 907 contacts (-74.8/contact) +
2D Compatibility (PS) -12817 + (NN) -8278 + (LL) 2520
1D Compatibility (HY) -16400 + (ID) 4750
Total energy: -107524.0 ( -118.55 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_2ZP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZP4-query.scw
PDB file :
Tito_Scwrl_2ZP4.pdb
: