Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTS------SVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKE----------------PPRGAHFLAKSLDDALRLIEQPELASKVDMVWIVGGSSVYQEAMNQPGH---LRLFVTRIM-QEFESDTFFPEIDLG-------KYKLLPEYPGVLSEVQE--EKGIKYKFEVYEKKD
3RG9 Chain:A ((26-239))
-LRPFSVVVASDEKGGIGDGGTIPWE-IPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVV-AVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQAIHRTVVRPASNSCSVFFDIPAAGTKTPEGLELVRE----SITDERVSTGAGGKKYQFEKLVPR-
General information:
TITO was launched using:
RESULT:
Template:
3RG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97151 for 1353 contacts (-71.8/contact) +
2D Compatibility (PS) -19451 + (NN) -5274 + (LL) -48
1D Compatibility (HY) -9200 + (ID) 2950
Total energy: -134074.0 ( -99.09 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_3RG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RG9-query.scw
PDB file :
Tito_Scwrl_3RG9.pdb
: