Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE
4IU6 Chain:A ((128-375))
--IKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIA-RNCYPSPLNYYNFPKSCCTSVNEVICHGIPDR-RPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRL------------
General information:
TITO was launched using:
RESULT:
Template:
4IU6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148208 for 2198 contacts (-67.4/contact) +
2D Compatibility (PS) -27773 + (NN) -12550 + (LL) 1160
1D Compatibility (HY) -20400 + (ID) 5900
Total energy: -213671.0 ( -97.21 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_4IU6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IU6-query.scw
PDB file :
Tito_Scwrl_4IU6.pdb
: