Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERPQPDSMPQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTHDTKDQSPSRAPGLRQRASNKVQDSAPVETPRGKPPLNTRSQAPLLRWVLTLSFLVATVAVGLYAM
1VGI Chain:A ((11-222))
----------QDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLT------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VGI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106423 for 1662 contacts (-64.0/contact) +
2D Compatibility (PS) -23342 + (NN) -19649 + (LL) 4000
1D Compatibility (HY) -26000 + (ID) 9000
Total energy: -180414.0 ( -108.55 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_1VGI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VGI-query.scw
PDB file :
Tito_Scwrl_1VGI.pdb
: