Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDLPPQLSFGLYVAAFALGFPLNVLAIRGATAHARLRLTPSLVYALNLGCSDLLLTVSLPLKAVEALASGAWPLPASLCPVFAVAHFFPLYAGGGFLAALSAGRYLGAAFPLGYQAFRRPCYSWGVCAAIWALVLCHLGLVFGLEAPGGWLDHSNTSLGINTPVNGSPVCLEAWDPAS-AGPARFSLSLLLFFLPLAITAFCYVGCLRALARSGL------------------------------------------------------------------------------------------------------------------------------------------------------------------THRRKLRAAWVAGGALLTLLLCVGPYNASNVASFLYP-----------NLGGSWRKLGLITGAWSVVLNPLVTGYLGRGP--GLKTVCAARTQGGKSQK |
| 3ODU Chain:A ((47-498)) | ---NKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLR-SMTDKYRLHLSVADLLFVITLPFWAVDAV--ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVS--------------EADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167843 for 1980 contacts (-84.8/contact) +
2D Compatibility (PS) -28068 + (NN) -3645 + (LL) 824
1D Compatibility (HY) -16400 + (ID) 2950
Total energy: -218082.0 ( -110.14 by residue)
QMean score : 0.271
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