Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTVKTEAAKGTLTYSRMRGMVAILIAFMKQRRMGLNDFIQKIANNSYACKHPEVQSILKISQPQEPELMNANPSPPPSPSQQINLGPSSNPHAK-PSDFHFLKVIGKG-SFGKVLLARHKAE-EVFYAVKVLQKKAILKKKEEKHIMSERNVLLK-NVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQR-ERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQ-GHIVLTDFGLCKENIEHNSTTS--TFCGTPEYLAPEVLHKQ---PYDRTVDWWCLGAVLYEMLYGL-PPFYSRNTAEMYDNILNKPLQL--KPNITNSARHLLEGLLQKDRTKRLGA-KDDFMEIKSHVFFSLIN---WDDLINKKITPPFNPNVSGPNDLRHFDPEFTEEPVPNSIGKSPDSVLVTASVKEAAEAFLGFSYAPPTDSFL |
| 1CDK Chain:A ((8-350)) | ---------------------------------------------------------KGSEQESVKEFLAKAKEDFLKKWENPAQNTA------HLDQFERIKTLGT-GSFGRVMLVKHKETG-NHFAMKILDKQKVVKLKQIEHTLNEKRILQAV--NFPFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRV-K--G--RTWTLCGTPEYLAPEIILS-KGY--NKAVDWWALGVLIYEMAAG-YPPFFADQPIQIYEKIVSGKVRFPS--HFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA---TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSI--------NEKCG-----KEFSEF---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CDK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170415 for 2578 contacts (-66.1/contact) +
2D Compatibility (PS) -34815 + (NN) -8166 + (LL) 6880
1D Compatibility (HY) -27200 + (ID) 6350
Total energy: -240066.0 ( -93.12 by residue)
QMean score : 0.438
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