Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFNISDIIKILPHSYPFLLVDRVIECDPSKSIKAIKNVTFNEPFFIGHFPNHPIMPGVLIVESLAQAS---AICILGKGSKSTMENKVVYLMSIENAKFRKPVTPGDTLILQADFKNARLSVCKFECFAYVGEEKVAEATILAMLQNI
3DP0 Chain:B ((11-155))
-QFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAER
General information:
TITO was launched using:
RESULT:
Template:
3DP0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111870 for 1036 contacts (-108.0/contact) +
2D Compatibility (PS) -15259 + (NN) -4277 + (LL) 208
1D Compatibility (HY) -14800 + (ID) 3300
Total energy: -149298.0 ( -144.11 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3DP0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DP0-query.scw
PDB file :
Tito_Scwrl_3DP0.pdb
: