Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGLKAWLITTFLLLYPSATFCDDCNFNLPYRGLSCNLDLSHKNLSNIKKLLNNSDKFVALTFDDGPSSNRVNNIINILENYKAKATFFL-------LGERINKKTSEIVKKIYNAGHELGNHSWSH-----KKLTSLSSEKQLQELEKTNMVIKNAIERDVKWFRSPYGCHDDNL--IKNTNQLNMCSIL-------WTVDSLDWQGDKPEILVDRVVGNVHNGAIILFHDHDNKSNTVEALPQIIKILKKLGYEFVTL-SEWE----ERVCKAKGVSMGEGVFKKILCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| 4NY2 Chain:A ((5-408)) | -----------------------------------------------------PKGTIYLTFDDGPVNASVE-VIKVLNQGGVKATFYFNAWHLDGIGDENEDRALEALKLALDSGHIVGNHSYDHMIHNCVEEFGPTSGADCNATGNHQIHSYQDPVRDAASFEQNLITLEKYLPTIRSYPNYKGYELARLPYTNGWRVTKH-FQADGLCATSD----NLKPWEPGYVCDPANPSNSVKASIQVQNILANQGYQTHGWDVDWAPENWGIPMPANSLTEAVPFLAYVDKALNSCSPTTIEPINSKTQEFPCGTPLHADKVIVLTHDFLFEDGKRGMGATQNLPKLAEFIRIAKEAGYVFDTMDNYTPRWSVGKTYQAGEYVLYQGVVYKAVISHTAQQDWAPSSTSSLWTNADPATNWTLNVSYEQGDIVNYKGKRYLVSVPHVSQQDWTPDTQNTLFTALEL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NY2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -43145 for 1347 contacts (-32.0/contact) +
2D Compatibility (PS) -20886 + (NN) 2580 + (LL) 3108
1D Compatibility (HY) -4800 + (ID) 2450
Total energy: -65593.0 ( -48.70 by residue)
QMean score : 0.337
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