Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPVEDNMASVIVAQLLFLESENPDKDIYMYINSPGGVVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTEGKRYSLPHSRIMIHQPSGGYQGQATDIEIHANEILRVKRKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEARRIGLIDRVIAERKDIKVENIKVEQKVG
1YG6 Chain:B ((2-193))
--LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN--------------
General information:
TITO was launched using:
RESULT:
Template:
1YG6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108080 for 1379 contacts (-78.4/contact) +
2D Compatibility (PS) -20350 + (NN) -8095 + (LL) 1436
1D Compatibility (HY) -26000 + (ID) 6550
Total energy: -167639.0 ( -121.57 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1YG6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YG6-query.scw
PDB file :
Tito_Scwrl_1YG6.pdb
: