Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MERVLITGGAGFIGSH-LVDDLQQDYDVYVLDNYRTGKREN---IKSLADDH--VFELDIREYDAVEQIMKTYQFDYVIHLAALVSVAESVEKPILSQEINVVATLRLLEIIKKYNSHIKRFIFASSAAVYGDLPDLPKSDQ-SLILPLSPYAIDKYYGERTTLNYCSLY-NIPTAVVKFFNVFG--PRQDPKSQYSGVISKMFD-----SFEHNKPFTFFG------DGLQTRDFVYVYDVVQSVRLIME---HKDAIGHGYNIGTGTFTNLLEVYRIIGELYGKSVEHEFKEARKGDIKHSYADISNL-KALGFVPKYTVETGLKDYFNFEVDNIEEVTAKEVEMS |
1KVS Chain:A ((2-329)) | --RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN--VKNFIFSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQ--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KVS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171944 for 2580 contacts (-66.6/contact) +
2D Compatibility (PS) -31962 + (NN) -7051 + (LL) 1636
1D Compatibility (HY) -18000 + (ID) 5200
Total energy: -232521.0 ( -90.12 by residue)
QMean score : 0.463
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