Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELKNVYRTFKNGDKNIRVLKDINIHINAGEFIAIMGPSGSGKSTLINILGFIDREYHGEYLFEGSNYQTQSDNQLANIRNKTVGFVFQNFKLIHNNTILENISMPLVYTNMNTIERKNKVMTVLSAVGLDGKGDFTP--------------SKLSGGQQQRVAIARAIINNPKFIIADEPTGALDSDTSKIIMDIFTSLNRDNHTTIILVTHDRKVAEKADRIIHILDGRI----QHEEVIK
2PMK Chain:A ((20-227))
-------------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL----RRQVGVVLQDNVLL-NRSIIDNIS--LANPGMS-------VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR--TVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL-
General information:
TITO was launched using:
RESULT:
Template:
2PMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98457 for 1408 contacts (-69.9/contact) +
2D Compatibility (PS) -19860 + (NN) -1078 + (LL) 2416
1D Compatibility (HY) -18800 + (ID) 3900
Total energy: -139679.0 ( -99.20 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_2PMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PMK-query.scw
PDB file :
Tito_Scwrl_2PMK.pdb
: