Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRL--VKDYDVIMTREPGGVPTGEEIRKIVLE----GND-MDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
5TMP Chain:A ((3-211))
-SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKR-ARARGELDRIEQESFDFFNRTRARYLELAAQD-KSIHTIDATQPLEAVMDAIRTTVTHWVKEL
General information:
TITO was launched using:
RESULT:
Template:
5TMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72933 for 1601 contacts (-45.6/contact) +
2D Compatibility (PS) -21987 + (NN) -10518 + (LL) 384
1D Compatibility (HY) -11200 + (ID) 3400
Total energy: -119654.0 ( -74.74 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_5TMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5TMP-query.scw
PDB file :
Tito_Scwrl_5TMP.pdb
: