Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK
1RU1 Chain:A ((3-136))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPP------PDYLNAAVALETSLAPEELLNHTQRIE-----LQQGR---RTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEM----------------
General information:
TITO was launched using:
RESULT:
Template:
1RU1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93542 for 923 contacts (-101.3/contact) +
2D Compatibility (PS) -13095 + (NN) -5764 + (LL) 2512
1D Compatibility (HY) -12000 + (ID) 2400
Total energy: -124289.0 ( -134.66 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1RU1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RU1-query.scw
PDB file :
Tito_Scwrl_1RU1.pdb
: