Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEA-INISKASEIMTHNLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSS-SSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIVAPSDNNKEEL
4UXJ Chain:B ((12-182))
-------GRIELIIGPMFAGKTTELMRRVKREIHARRSCFVIKYS-----------SHDQLMLRAQAAVSQLTEV-RDTWKRFDVLAIDEGQFFSD-LVDFCNTAADAGKVVMVSALDGDYRRKPFGQICELVPYCEAVDKLTAVCMMCHEQPACFTRRTVNVEQQE------LIGGADMYIATCR---------------
General information:
TITO was launched using:
RESULT:
Template:
4UXJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73976 for 1211 contacts (-61.1/contact) +
2D Compatibility (PS) -17202 + (NN) -7695 + (LL) 2916
1D Compatibility (HY) -16400 + (ID) 2950
Total energy: -115307.0 ( -95.22 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_4UXJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UXJ-query.scw
PDB file :
Tito_Scwrl_4UXJ.pdb
: