Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLIFLIVIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKYVGKDITLKELIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKKNKNFLLDLMFNNKNGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKLISETAKSVMKEF |
4C6Y Chain:B ((2-262)) | --------------------AALSEQLAELEKRSGGRLGVAVLDTATGRRIAYRGDERFPMCSTFKALLAAAVLAQVDQGKERLDRRITYSKADLVDYSPVTEKHVGGGMTVAELCEAAITYSDNTAANLLLEALGGPAALTAFLRSIGDEVTRLDRWEPELNEALPGDPRDTTTPRAMAATLRKLLLGDALSPASREQLVDWLLANKTGDKRLRAGLPADWRVGDKT-GTGGHGTTNDIAVIWPPNRA-PIVVAVYYTESQADAEARDAVIAEVGRLVAEAF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C6Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25678 for 2352 contacts (-10.9/contact) +
2D Compatibility (PS) -28362 + (NN) -14423 + (LL) 2228
1D Compatibility (HY) -18400 + (ID) 4700
Total energy: -89335.0 ( -37.98 by residue)
QMean score : 0.741
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