Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLINEKLNNLENSATKSPKEAVVLLNMGGPNSLYEVGVFLKNMFDDPFILTIKNNFMRKMVGKMIVNSRIEKSKKIYEKLGGKSPLTPITFALTERLNE-LD------PSRFYTYAMRYTPPYASMVLQDLALKEIESLVFFSMYPQYSSTTTLSSFNDAFNALKSLE-TFRPKVRVIERFYADKKLNEIILNTILSALNN-C--KSQDFVLIFSVHGLPKSIVDAGDTYQQECEHHVSLLKELMQQKNIPFKEVLLSYQSKLGPMKWLEPSTEELIEKHRK---SNIIIYPLAFTIDNSETLYELDMQYRL-MAERLAVKEYLVCPCLNDSIEFAKFIIELVKNLKSE |
| 3HCN Chain:A ((1-326)) | ----------------RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPI---QNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEY----CNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HCN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -188703 for 2536 contacts (-74.4/contact) +
2D Compatibility (PS) -33872 + (NN) -20707 + (LL) 1288
1D Compatibility (HY) -21200 + (ID) 5100
Total energy: -268294.0 ( -105.79 by residue)
QMean score : 0.524
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