Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLMKFQLFIQPKLDVLQGNIVEYEILLRDDS-AV-PRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKK-------YPNDRFAINIAPQQLFYIETLHWLD----KLKSESHRITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
3SY8 Chain:A ((152-381))
-DNGEFEAYYQPKVALDGGGLIGAEVLARWNHPHLGVLPPSHFLYVMET----YNLVDKLFWQLFSQGLATRRKLAQLGQPINLAFNVHPSQLGSRALAENISALLTEFHLPPSSVMFEITETGLI--------SAP---ASSLENLVRLWIMGCGLAMDDFGAGYSSLDRLCEFPFSQIKLDRTFVQKMKTQ-PRSCAVISSVVALAQALGISLVVEGVESDEQRVRLIELGCSIAQGYLFARPMP-
General information:
TITO was launched using:
RESULT:
Template:
3SY8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128890 for 1648 contacts (-78.2/contact) +
2D Compatibility (PS) -23228 + (NN) -10225 + (LL) 1100
1D Compatibility (HY) -11200 + (ID) 2650
Total energy: -175093.0 ( -106.25 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_3SY8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SY8-query.scw
PDB file :
Tito_Scwrl_3SY8.pdb
: