Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ----------------------------------MKMLKKGTAVLFVMIMAVMLVACGDKEE---TKTYTLSQNGV---DSKLTYTYKGDKVTKQTAEN------TMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIP-GMSSNGDTSKGISMEESAKMLESQGYKEVSK----- |
3M65 Chain:A ((4-209)) | ELKRSIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHDHMIFLATQQDISIDEPGEDEIFTVGTYTKIKQMLKLPNGTIRVLVEGLKRAHIVKYNEHEDYTSVDIQLIHEDKDTEDEALMRTLLDHFDQYIKISKKISAETYAAVTDIE-EPGRMADIVASHLPLKLKDKQDILETADVKDRLNKVIDFINNEKEVLEIEK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M65.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 22717 for 765 contacts (29.7/contact) +
2D Compatibility (PS) -16236 + (NN) -1582 + (LL) 192
1D Compatibility (HY) -4000 + (ID) 900
Total energy: 191.0 ( 0.25 by residue)
QMean score : 0.182
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