Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVVVKNVTFGEGAPKICVPMVGKTVAALKEEAEMLQTID-----LDVVEWRVDFFEDVKDLAKVEAALGEIRAILPETPILFTFRSAKEGGELAVSDEFYFELNETLAGTGKIDLVDVELFNEEADV-----LRLIETAHKNNVKVVMSNHDFDKTPAKEEIVSRLTRMEALGADLPKIAVMPKSAGDVLTLLDATNTVFEKANQPIITMSMAGTGVISRLAGEVFGSAMTFGAAKKASAPGQIDVNELRHVLDLLHKQF
1SFJ Chain:B ((4-232))
-------------------VEVVATITPQLY--ETLIQKINHRIDAIDVLELRIDQFENVT-VDQVAEMITKL---QDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEW---QADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLK----------
General information:
TITO was launched using:
RESULT:
Template:
1SFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100289 for 1788 contacts (-56.1/contact) +
2D Compatibility (PS) -22985 + (NN) -5194 + (LL) 3000
1D Compatibility (HY) -22000 + (ID) 3650
Total energy: -151118.0 ( -84.52 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_1SFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SFJ-query.scw
PDB file :
Tito_Scwrl_1SFJ.pdb
: