Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VANKFKTLDKMVYNLLLEKIKNGELVPNEHL-AEEKLAREFGVSRSPLRKAIATLTAQGIVSYHENSGAVL-------------NDCIVDADRYVQLMETIEIFVDAAIAKAAHFGYEMDLEKLYARMQEMERFSYLTDLENYFDAHHRFILCLISFAENPYQVRIVKQIFFQMVHFSDGINMFKSVEIREWTNKKSNQIYELLAEGKIELARKTIKSMFAELTIQAYR--
1E2X Chain:A ((10-231))
-----QSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLLSVRTNISTIFIRTAFRQHPDKAQEVLATANEVA--DHADAFAELDYNIFRGLAFASGNPIYGLILNGMKGLYTRIGRHY--FANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHESGEIWHRMQ
General information:
TITO was launched using:
RESULT:
Template:
1E2X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139505 for 1489 contacts (-93.7/contact) +
2D Compatibility (PS) -22505 + (NN) -14404 + (LL) 848
1D Compatibility (HY) -3200 + (ID) 1600
Total energy: -180366.0 ( -121.13 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_1E2X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1E2X-query.scw
PDB file :
Tito_Scwrl_1E2X.pdb
: