Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLFRQDENILNSELAEDLPIPRHVAIIMDGNGRWAKKRFLPRIAGHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFFDSFVPELIEENVRVNVMGYRENLPDHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITAAKEAMKELELEGKSADDLTEEKLNDHLMSSGLGDPDLLIRTSGELRLSNFMLWQLAYSEFYFTDTHWPDFSKEDFLQAIIEYQNRSRRFGGL
2DTN Chain:B ((17-242))
------------------------KHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYA----------------MKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFK-SLLESP---------LENEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGE-
General information:
TITO was launched using:
RESULT:
Template:
2DTN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101873 for 1522 contacts (-66.9/contact) +
2D Compatibility (PS) -22051 + (NN) -7350 + (LL) 3224
1D Compatibility (HY) -14000 + (ID) 3800
Total energy: -145850.0 ( -95.83 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_2DTN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DTN-query.scw
PDB file :
Tito_Scwrl_2DTN.pdb
: