Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIGIIGAMEEEV-ELLKNSMSSVEEIVIGGAKFYIGEIASKEVVLLESGIGKVNAALGTTLMADRFKPEVIINTGSAGGMAEGLAVGDVIISDRLAYGDVDVTEFGYTYGQVPRMPAFYQGDAVLLKKAETIYRE-YFATSENKAVYGLVVTNDSFIMRPDQHEIIRTFFPDVKAVEMEAAAIAQVAYQFDIPFLIIRAISDLANQEATISFDEFIHLAAKQSATCIIELLKTI
3NM5 Chain:A ((4-220))
--IGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKE-----GVIASGDQFVHSKERKEFLVSEFK-ASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSA----------
General information:
TITO was launched using:
RESULT:
Template:
3NM5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129866 for 1861 contacts (-69.8/contact) +
2D Compatibility (PS) -23113 + (NN) -10591 + (LL) 1888
1D Compatibility (HY) -16000 + (ID) 3800
Total energy: -181482.0 ( -97.52 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_3NM5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NM5-query.scw
PDB file :
Tito_Scwrl_3NM5.pdb
: