Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRTAQKKGEDFVVFFFTPMCGSCQ-IASRLVDVVIEADGIQTEVAKVNLNYVPDIAQSLEITSVPALVKFKNGQPADLSYQLHDATAIFEFLYSE
4V2L Chain:B ((24-87))
-----------VIDFYATWCGPCKMIAPKLEELSQSMSDVV--FLKVDVDECEDIAQDNQIACMPTFLFMKNGQKLD------------------
General information:
TITO was launched using:
RESULT:
Template:
4V2L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68283 for 370 contacts (-184.5/contact) +
2D Compatibility (PS) -6790 + (NN) -2146 + (LL) 2624
1D Compatibility (HY) -6000 + (ID) 1050
Total energy: -81645.0 ( -220.66 by residue)
QMean score : 0.684
(partial model without unconserved sides chains):
PDB file :
Tito_4V2L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V2L-query.scw
PDB file :
Tito_Scwrl_4V2L.pdb
: