Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVRGFELVSQFSNKELLPKRETAHAAGYDLKVAKKTVIEPGEITLVPTGIKAHMQPGEVLYLYDRSSNPRKKGIVLINSVGVIDGDYYNNQVNEGHIFAQMQNITD-QAVILEEGERIVQAVFAPFL-----LADDD-----QATGMRTGGFGSTGK
3HZA Chain:A ((25-170))
-------LAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGY------RGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGWGSSGG
General information:
TITO was launched using:
RESULT:
Template:
3HZA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46961 for 885 contacts (-53.1/contact) +
2D Compatibility (PS) -14140 + (NN) -1071 + (LL) 660
1D Compatibility (HY) -5600 + (ID) 1900
Total energy: -69012.0 ( -77.98 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_3HZA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HZA-query.scw
PDB file :
Tito_Scwrl_3HZA.pdb
: