Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIAAMEEELKLLVENLEDKSQETVLS-NVYYSGRYGEHELVLVQSGVGKVMSAMSVAILVESFKVDAIINTGSAGAVATGLNVGDVVVADTLVYHDVDLTAFGYDYGQMSMQPLYFHSDKTFVSTFEAVLSKEEMTSKVGLIATGDSFIAGQEKIDVIKGHFPQVLAVEMEGAAIAQAAQATGKPFVVVRAMSDTAAHDANITFDEFIIEAGKRSAQVLMAFLKAL
4BMZ Chain:A ((24-247))
-KIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVAIQLVQHDVDLSAFDHPLGFIPESAIFIETSESLNALAKEVANEQHIVLKEGVIASGDQFVHSKERKEFLVSEF-KASAVEMEGASVAFVCQKFGVPCCVLRSISNNADEEANMSFDAFL----EKSAQTSAKFLKSM
General information:
TITO was launched using:
RESULT:
Template:
4BMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166592 for 1990 contacts (-83.7/contact) +
2D Compatibility (PS) -23844 + (NN) -6404 + (LL) 348
1D Compatibility (HY) -18000 + (ID) 3800
Total energy: -218292.0 ( -109.69 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4BMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BMZ-query.scw
PDB file :
Tito_Scwrl_4BMZ.pdb
: