Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKLTVKDVDLKGKKVLVRVDFNVPLKD-GVITNDNRITAALPTIKYIIEQGGRAILFSHLGRVKEEADKEGKSLAPVAADLAAKLGQDVV-FPGVTRGAKLEEAINALEDGQVLLVENTRFEDVDGKKESKNDEELGKYWASLGDGIFVNDAFGTAHRAHASNVGISANVEK--AVAGFLLENEIAYIQEAVETPERPFVAILGGSKVSDKIGVIENLLEKADKVLIGGGMTYTFYKAQGIEIGNSLVEEDKLDVAKDLLEKS--NGK-LILPVDSKEANAFAGYTEVRDTEGEAVSEGFLGLDIGPKSIAKFDEALTGAKTVVWNGPMGVFENPDFQAGTIGVMDAIVKQLGVKSIIGGGDSAAAAINLGRADKFSWISTGGGASMELLEGKVLPGLAALTEK |
| 3Q3V Chain:A ((6-399)) | -DIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEIS--SKYSLEPVAKRLARLLDKEIVMAKD-VIGEDAKTKAMNLKAGEILLLENLRFEKG----ETKNDENLAKELASMVQ-VYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEG-HATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3Q3V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176385 for 3526 contacts (-50.0/contact) +
2D Compatibility (PS) -41602 + (NN) -12086 + (LL) 336
1D Compatibility (HY) -33600 + (ID) 8950
Total energy: -272287.0 ( -77.22 by residue)
QMean score : 0.632
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