Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEQFLKDNFSLEGKVALITGASYGIGFSIATAFARAGATIVFNDIKQELVDKGISAYKKLGIKAHGYVCDVTDEDGINEMVDKISQDVGVIDILVNNAGIIKRTPMLEMSAADFRQVIDIDLNAPFIVSKAVLPGMIQKGHGKIINICSMMSELGRETVAAYAAAKGGLKMLTKNIASEYGSANIQCNGIGPGYIATPQTAPLRERQDDGSRHPFDQFIIAKTPAARWGEAEDLGAPAIFLASDASNFINGHILYVDGGILAYIGKQPQ
4BO6 Chain:B ((18-266))
----LYFQSMSLQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAGIT----------DEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVV-----AGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREA--------LLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYMS------
General information:
TITO was launched using:
RESULT:
Template:
4BO6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182192 for 1948 contacts (-93.5/contact) +
2D Compatibility (PS) -24894 + (NN) -4551 + (LL) 2344
1D Compatibility (HY) -16400 + (ID) 4400
Total energy: -230093.0 ( -118.12 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_4BO6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BO6-query.scw
PDB file :
Tito_Scwrl_4BO6.pdb
: