Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAHIGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFF-DKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDIT-EDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
2DTN Chain:B ((15-242))
----------------TLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYA----------------MKMLKKYLKDERSTYLD-NNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESP-----------LENEISNRLDTRNLP----EVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGE-
General information:
TITO was launched using:
RESULT:
Template:
2DTN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77671 for 1530 contacts (-50.8/contact) +
2D Compatibility (PS) -22212 + (NN) -12581 + (LL) 3872
1D Compatibility (HY) -15200 + (ID) 4250
Total energy: -128042.0 ( -83.69 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_2DTN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DTN-query.scw
PDB file :
Tito_Scwrl_2DTN.pdb
: