Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNTPLYKALIQHARRNSHSFHVPGHHNGDVFFDDAK------SIFDPLLTIDVT-ELAGLDDLHHPSGVIKEAQELASQLYGSAESFFLVNGTTVGNLAMILSVCEPGDTILVQRNCHKSVFHAVDLSGAEPVYLAPDVDSAMHVPTHV-----PLGTIKEALEAY--------PDAKGLVLTNPTYYGHSADLTEIITEAHHYGIPVLVDEAHGAHFILGEPFPV-SAL------KMGAD-IVVQSAHKTLPAMTMGSYLHLNSSCRI--NRDRVAEYLNRLQSSSPSYPIMASLDIARAYVQHIIEEQKLSDILQRIETLKQTFDSLT-NAEAVN--------PANP-------------------------------------------LIITDPLKLTIRS-KRGHSGY---------TLQSILERANIFTELADENQVLLVLPLGGKRRINAEIIRSIDEEIEKTPPDQ---TFVS------------------------------------AEWGVQPVTVLPYPKKVL----HSFKKEYVSFEEAAGRLNAEDIIPYPPGIPMIMAGERITK---ESVQKLSRLISMKTHVQGNMKIKEKQLLVYIEEEKS |
| 2VYC Chain:A ((139-742)) | -LPPLFSALMKYSDIHEYSWAAPGHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNR-YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG-RGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELVEQYPDTYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPVAEVT-PREAYNAIVD-NNVELVSIENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSYLRSLQSWDHHFPGFEHETEGTE--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VYC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -166212 for 3732 contacts (-44.5/contact) +
2D Compatibility (PS) -50254 + (NN) -17070 + (LL) 1484
1D Compatibility (HY) -22800 + (ID) 5700
Total energy: -260552.0 ( -69.82 by residue)
QMean score : 0.440
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