Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMESKVVENRLKEAKLIAVIRSKDKQEACQQIESLLDKGIRAVEVTYTTPGASDIIESFRN-REDILIGAGTVISAQQAGEAAKAGAQFIVSPGFSADLAEHLSFVKT------HYIPGVLTPSEIMEALTFGFTTLKLFPSG-VFGIPFMKNLAGPFPQVTFIPTGGIHPSEVPDWLRAGAGAVGVGSQLGSCSKEDLQAVFQV
3VCR Chain:A ((11-197))----------NTKPLIPVIVIDDLVHAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKLDGQWQGVFLPGVATASEVMIAAQAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPTGGISKDNYKEYLGLPNVICAGGSWLTESKLLI-------


General information:
TITO was launched using:
RESULT:

Template: 3VCR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 936 -58146 -62.12 -324.84
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -62.12
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.566

(partial model without unconserved sides chains):
PDB file : Tito_3VCR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VCR-query.scw
PDB file : Tito_Scwrl_3VCR.pdb: