Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGNTRKKVSVIGAGFTGATTAFLIAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDAKITGTSNYEDTAGSDIVVITAGIARKPGMSRDDLVSTNEKIMRSVTQEIVKYSPDSIIVVLTNPVDAMTYAVYKESGFPKERVIGQSGVLDTARFRTFVAEELNLSVKDVTGFVLGGHGDDMVPLVRYSYAGGIPLETLI-----PKERIDAIVERTRKGGGEIVNLLGNGSAYYAPAASLTEMVEAILKDQRRVLPTIAYLEGEYGYEGIYLGVPTIVGGNGLEQIIELELTDYERAQLNKSVESVKNVMKVLS
3GVH Chain:C ((6-316))---ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIA--EGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGADVVIVTAGVP-----SRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGHGDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLLKTGSAFYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEIDLDKDEKAQFDKSVASVAGLCEAC-


General information:
TITO was launched using:
RESULT:

Template: 3GVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1663 -124766 -75.02 -414.50
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain C : 0.88

3D Compatibility (PKB) : -75.02
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.88
QMean score : 0.556

(partial model without unconserved sides chains):
PDB file : Tito_3GVH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GVH-query.scw
PDB file : Tito_Scwrl_3GVH.pdb: