Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGTPQPRALGPDAL--DVSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKLSGAQLTCLHEAMASVLSDAVRRSVGQGAAMLK-GEKRSGLRVHARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
1K82 Chain:D ((128-267))
---------LGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAE--C--ELLARVIKAVLLRSIEQGGTTLKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQ----------------
General information:
TITO was launched using:
RESULT:
Template:
1K82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67272 for 1017 contacts (-66.1/contact) +
2D Compatibility (PS) -13537 + (NN) -4996 + (LL) 1820
1D Compatibility (HY) -8800 + (ID) 2450
Total energy: -95235.0 ( -93.64 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_1K82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K82-query.scw
PDB file :
Tito_Scwrl_1K82.pdb
: