Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRRKVRRLTLAVSALVALFPAVAGCSDSGDNKPGATIPSTPANAEGRHGPFFPQCGGVSDQTVTELTRVTGLVNTAKNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVEDINIDGHSGFIAIGNEPSLGDSLCEVGIQFSDDFIEWSVSFSQKPFPLPCDIAKELTRQSIANSK |
2KZQ Chain:A ((1-36)) | --------------------------------------------------------------SDLPALSTGLLHLHQNIVDVQYMYGLSPAITKYVVR--------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KZQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2487 for 134 contacts (18.6/contact) +
2D Compatibility (PS) -3388 + (NN) 3811 + (LL) 6592
1D Compatibility (HY) -1200 + (ID) 350
Total energy: 7952.0 ( 59.34 by residue)
QMean score : -0.446
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