Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTDDYLANNVDYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIRPTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVTP
4YF4 Chain:A ((12-172))
--VTDDYLANNVDYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIRPTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVTP
General information:
TITO was launched using:
RESULT:
Template:
4YF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99542 for 1105 contacts (-90.1/contact) +
2D Compatibility (PS) -17324 + (NN) -7326 + (LL) 260
1D Compatibility (HY) -22800 + (ID) 8050
Total energy: -154782.0 ( -140.07 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_4YF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YF4-query.scw
PDB file :
Tito_Scwrl_4YF4.pdb
: