Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRVVVIGSGFAGLWAALGAARRLDELAVLAGTVDVMVVSNKPFHDIRV-RNYEADLSAC-------RIPLGDVLGPAGVAH-VTAEVTAIDADGRRVTTS---T--GASYSYDRLVLASGSHVVKPALPGLAE-FGFDVDTYDGAVRLQQHLQGLAGGPLTSAAATVVVVGAGLTGIETACELPGRLHALFARGDGVTPRVVLIDHNPFVGSDMGLSARPVIEQALLDNGVETRTGVSVAAVSPG-----------------------GVTLSSGERLAAATVVWCAGMRAS-RLTEQLPVARDRLGRLQVDDYLRVIGVPAMFAAGDVAAARMDD-E-HLSVMSCQHGRPMGRYAGCNVINDLFDQPLLALRIPWYVTVLDLGSAGAVYTEGWERKVVSQGAPAKTTKQSINTRRIYPPLNGSRADLLAAAAPRVQPRP |
| 3NTD Chain:A ((1-338)) | MKKILIIGGVAGGASAAARARRLS-------ETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQM-------NNVEHATVVGGGFIGLEMMESLHHLG-----------IKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGR----------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233131 for 2461 contacts (-94.7/contact) +
2D Compatibility (PS) -31747 + (NN) -7074 + (LL) 6560
1D Compatibility (HY) -11200 + (ID) 3550
Total energy: -280142.0 ( -113.83 by residue)
QMean score : 0.461
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