Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHL-AADLLVALDRNHARLLRQL-GVE---AARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS
3N8I Chain:A ((4-156))
--ATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQK---QLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKA----------
General information:
TITO was launched using:
RESULT:
Template:
3N8I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102399 for 1240 contacts (-82.6/contact) +
2D Compatibility (PS) -16396 + (NN) -10316 + (LL) 232
1D Compatibility (HY) -12400 + (ID) 2500
Total energy: -143779.0 ( -115.95 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_3N8I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N8I-query.scw
PDB file :
Tito_Scwrl_3N8I.pdb
: