Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGEHGSTFGGNPLAAAIGTPVVSMVVWGEC----QARSAKLGAHLH--QRLADLIGDGAVALRGLGWWADVDIE-RALAIGTDMSMRLADRGVLLKDTYGAALRFAPPLVITAQEIDCAVRRFADALWEAGS
4JEY Chain:B ((238-415))
LVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGATFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSD----IRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAV-----
General information:
TITO was launched using:
RESULT:
Template:
4JEY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112978 for 1173 contacts (-96.3/contact) +
2D Compatibility (PS) -17833 + (NN) -4502 + (LL) 656
1D Compatibility (HY) -11600 + (ID) 3050
Total energy: -149307.0 ( -127.29 by residue)
QMean score : 0.148
(partial model without unconserved sides chains):
PDB file :
Tito_4JEY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JEY-query.scw
PDB file :
Tito_Scwrl_4JEY.pdb
: