Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVHVVDHPLAAARLTTLRDERTDNAGFRAALRELTLLLIYEATRDAPCEPVPIRTPLAETV-GSRLTKPPLLVPVLRAGLGMVDEAHAALPEAHVGFVGVARDEQTHQPVPYLDSLPDDLTDVPVMVLDPMVATGGSMTHTLGLLISRGAAD--ITVLCVVAAPEGIAALQKAAPNVRLFTAAIDEGLNEVAYIVPGLGDAGDRQFGPR
1BD4 Chain:B ((46-241))
------------AMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFG--
General information:
TITO was launched using:
RESULT:
Template:
1BD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139872 for 1465 contacts (-95.5/contact) +
2D Compatibility (PS) -20793 + (NN) -9400 + (LL) 1200
1D Compatibility (HY) -16400 + (ID) 3600
Total energy: -188865.0 ( -128.92 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_1BD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BD4-query.scw
PDB file :
Tito_Scwrl_1BD4.pdb
: