Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKQIPVQDVTPPAKGDTNNNDLYAKREKIYTRAFTGIFRRLRMVGGAALFLLYFGTVWLNWSGRQAVWWDLPERKFYIFGATFWPQDFMLLSWLLIVCAFGLFFITVFAGRVWCGYTCPQSVWTWIYMWCEKVTEGDRNQRIKLDKAPMSGNKLLRKTAKHSLWLLIGLV---TGLTFVG-YFSPI---RELIPELLTGQADGWAYFWVGFFTLATYGNAGWLREQVCIYMCPYARFQSVMFDKDTLIVSYDPRRGEKRGPRKKSLDYKAQGLGDCIDCTMCVQVCPTGIDIRDGLQIECIGCAACIDACDSIMEKMNYPKGLISYTTEHNLNGQKTHLARPRLIGYAIALVLMISALITAVVLRPLVGFDVSKDRVLYRENELGRIENVYSLKI---MNKDQQDHTYILGAKGLEGLTLE-GRRELKVAAGDILNLPMELSIEPEKLPSTTNEIVFTIESADDPSIHKEAKSRFIGPRTR |
| 4OV4 Chain:A ((23-408)) | -PKTIHIQDVTLR-DGNQALKRPWTIDEKIE------VFDLLVELNVDGIEVGFPSSNETEFHTCQVLSKRAPKGK-PIAALSRANQNEIAVTWEAIQKA-----------------DCPRMHIVYP------VSDFSIKHVLKIS------EKEVLQKIRNSISFARSIVGPGIEIQFSGEHFGDAIENFAFTKEAFLTAIEAGANIINLPNTVERY------RPMVFVNMV--KEIKDVVKDKAIISIHTHNDLGMATATSVESVYVGAE-------------------------QIEV--------ALNGLGERAGNTN-LYETAIALHQNGENLNINFQRIYPTAKRISELTGIPIGEK--TPIIGEDIFSHRSGIHQHQSKGAYRTFSPEFVGRMDKETISFTNQSGHKAIEFLLHQRGIQVSKEGIHHLFSLAKSISSRENNREITEAELVALSQ--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OV4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171448 for 3058 contacts (-56.1/contact) +
2D Compatibility (PS) -38840 + (NN) -6619 + (LL) 5424
1D Compatibility (HY) -2400 + (ID) 3650
Total energy: -217533.0 ( -71.14 by residue)
QMean score : 0.202
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