Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHDEREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAPFPL---TAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYTPLIWNGEDFQE---NRF-FWEEALHHGIRHGWSIPVRGKYGL-ISMLSLVRSSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPE-SNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLLN
3QP6 Chain:A ((24-259))
----LLEWIHMAGHIETEGELKAFLDNILSQAPSDRIILVLGRLNNQNQIQRMEKVLNVSYPSDWLNQYSQENFAQHDPIMRIHL-GQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDRNNVGSILSIGGKEPGRNA----ALVAMLNCLTPHLHQAAVRIANLP-PASPSNMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKLNANNRTHAIVLGMHLAMTP
General information:
TITO was launched using:
RESULT:
Template:
3QP6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87777 for 1648 contacts (-53.3/contact) +
2D Compatibility (PS) -24205 + (NN) -10427 + (LL) 1196
1D Compatibility (HY) -8800 + (ID) 2850
Total energy: -132863.0 ( -80.62 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_3QP6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QP6-query.scw
PDB file :
Tito_Scwrl_3QP6.pdb
: