Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLFVTLEGPEGAGKSTNRDYLAERLRE-RGIE-VQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLNG
3LD9 Chain:D ((21-201))
--SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKA--QGLDSLSELLFFIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVI-DVYPDITFIIDVD--------------------DMEFYYRVRDGFYDIAKKNPHRCHVI--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3LD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43775 for 1220 contacts (-35.9/contact) +
2D Compatibility (PS) -18730 + (NN) -16442 + (LL) 3304
1D Compatibility (HY) -20400 + (ID) 3300
Total energy: -99343.0 ( -81.43 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_3LD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LD9-query.scw
PDB file :
Tito_Scwrl_3LD9.pdb
: